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diemr: Diagnostic index expectation maximisation in R1 years ago
Quick start | Input data | Multiple compartments with different ploidies | Frequently asked questions
diemr 1.5.5Natália Martínková, Stuart J.E. Bairddiemr-diagnostic-index-expecation-maximisation-in-r.Rmd
Importing data for genome polarisation1 years ago
Quick start | Principle of conversion to diem format | Invariant sites and indels | Sites not informative for genome polarisation | Haploid data | Diploid data | Heterozygotes in DNA sequence alignments | Variant call format | Polyploid data
diemr 1.5.5Natália Martínková, Stuart J.E. BairdImporting-data-for-genome-polarisation.Rmd
Understanding genome polarisation output files1 years ago
Obligatory outputs | MarkerDiagnosticsWithOptimalPolarities | HIwithOptimalPolarities | I4withOptimalPolarities | Optional outputs | The user perspective | NullMarkerPolarities | MarkersWithChangedPolarities | MarkersWithChangedPolarities-(compartmentNumber) | MarkerDiagnostics(iteration)-(compartmentNumber) | Iteration-specific graphics | WarpSwitch files | Hybrid index files | The log file | References
diemr 1.5.5Natália Martínková, Stuart J.E. BairdUnderstanding-genome-polarisation-output-files.Rmd