Package: diemr 1.4.3

diemr: Diagnostic Index Expectation Maximisation in R

Likelihood-based genome polarisation finds which alleles of genomic markers belong to which side of the barrier. Co-estimates which individuals belong to either side of the barrier and barrier strength. Uses expectation maximisation in likelihood framework. The method is described in Baird et al. (2023) <doi:10.1111/2041-210X.14010>.

Authors:Natalia Martinkova [aut, cre], Stuart Baird [aut]

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NEWS

# Install 'diemr' in R:
install.packages('diemr', repos = c('https://nmartinkova.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stuartjebaird/diem/issues

On CRAN:

3.26 score 1 scripts 483 downloads 12 exports 34 dependencies

Last updated 1 months agofrom:758926eef6. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 19 2025
R-4.5-winNOTEFeb 19 2025
R-4.5-macNOTEFeb 19 2025
R-4.5-linuxNOTEFeb 19 2025
R-4.4-winOKFeb 19 2025
R-4.4-macOKFeb 19 2025
R-4.3-winOKFeb 19 2025
R-4.3-macOKFeb 19 2025

Exports:CheckDiemFormatdiememPolariseimportPolarizedpHetErrOnStateCountplotDeFinettiplotMarkerAxisplotPolarizedrank2mapsmoothPolarizedGenotypessStateCountvcf2diem

Dependencies:apecliclusterdigestdplyrfansigenericsgluelatticelifecyclemagrittrMASSMatrixmemusemgcvnlmepermutepillarpinfsc50pkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vcfRvctrsveganviridisLitewithrzoo

diemr: Diagnostic index expectation maximisation in R

Natália Martínková, Stuart J.E. Baird

Rendered fromdiemr-diagnostic-index-expecation-maximisation-in-r.Rmdusingknitr::rmarkdownon Feb 19 2025.

Last update: 2024-12-02
Started: 2022-03-29

Importing data for genome polarisation

Natália Martínková, Stuart J.E. Baird

Rendered fromImporting-data-for-genome-polarisation.Rmdusingknitr::rmarkdownon Feb 19 2025.

Last update: 2024-09-24
Started: 2023-03-21

Understanding genome polarisation output files

Natália Martínková, Stuart J.E. Baird

Rendered fromUnderstanding-genome-polarisation-output-files.Rmdusingknitr::rmarkdownon Feb 19 2025.

Last update: 2024-09-24
Started: 2024-07-17